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Heat shock protein of Agrobacterium tumefaciens str. C58

 Names & Lineage - Classification - Sequence - Domains - Ontologies - Refernces - X-Ref - External Links -Record Info 

NAMES AND LINEAGE

Protein names

Name

Heat shock protein

Synonymous Names

Q7D321_AGRT5, HSP20

Taxon Information

Organism

Agrobacterium tumefaciens str. C58

Organism ID

176299 [NCBI] [UNIPROT]

Lineage

Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens str. C58

CLASSIFICATION

Protein Classification

Protein Family

Belongs to sHsp Protein family

SEQUENCE INFORMATION

Sequence
MATSYDYAPLFRNSIGFDRALNLLENAQRARSISDWPPYDIIKTGDDSYRIAIAVAGFALDDLDITFQSN LLTVTGQKHEASTEAYLHRGIAARSFEHRFELADHVRVSAAELKNGLLSVNLVREVPEEMRPRKIAIETA LKLEPSTPAERIEEKKAA

FASTA Format Composition Secondary Structure

Nucleotide
 ATGGCAACATCCTATGACTATGCACCGCTGTTTCGAAACAGCATCGGTTTCGATCGGGCGCTCAATCTTCTCGAAAACGCACAGCGTGC
CCGCTCGATCAGCGACTGGCCGCCCTATGACATCATCAAGACCGGCGATGACAGCTATAGGATCGCTATCGCGGTGGCGGGTTTTGCACT
GGACGATCTGGACATAACATTCCAATCCAACCTTCTGACCGTGACTGGCCAGAAGCATGAGGCGTCTACTGAAGCCTATCTCCACCGCGG
CATCGCCGCGCGATCGTTTGAACACCGCTTCGAACTTGCCGACCATGTCAGGGTAAGCGCAGCGGAGCTAAAAAACGGTCTCCTCTCCGT
AAATCTCGTTCGCGAGGTTCCGGAAGAAATGAGACCACGAAAAATCGCCATCGAGACTGCGCTGAAGCTTGAGCCTTCAACTCCTGCGGA
GCGGATCGAAGAAAAGAAGGCTGCATAA 

Download Fasta Sequence

Composition
NucleotideCountPercentage
Adenine12126 %
Guanine12226 %
Thyamine9621 %
Cytosine13829 %
A+T21746 %
G+C26055 %

Total Bases :   477 bases

Microsatellites
SequencePosition LengthRepeats
CGCGCG27523
AAAAAA33823

Microsatellite Map

ATGGCAACATCCTATGACTATGCACCGCTGTTTCGAAACAGCATCGGTTTCGATCGGGCGCTCAATCTTCTCGAAAACGCACAGCGTGCC
CGCTCGATCAGCGACTGGCCGCCCTATGACATCATCAAGACCGGCGATGACAGCTATAGGATCGCTATCGCGGTGGCGGGTTTTGCACTG
GACGATCTGGACATAACATTCCAATCCAACCTTCTGACCGTGACTGGCCAGAAGCATGAGGCGTCTACTGAAGCCTATCTCCACCGCGGC
ATCGCCGCGCGATCGTTTGAACACCGCTTCGAACTTGCCGACCATGTCAGGGTAAGCGCAGCGGAGCTAAAAAACGGTCTCCTCTCCGTA
AATCTCGTTCGCGAGGTTCCGGAAGAAATGAGACCACGAAAAATCGCCATCGAGACTGCGCTGAAGCTTGAGCCTTCAACTCCTGCGGAG
CGGATCGAAGAAAAGAAGGCTGCATAA

Gene Information
Molecule Type genomic DNA
Bases 477 Bases
Molecular Weight147110.11 Da
Coding Sequence AE007872.2:442069..442545
NCBI ReferenceAAK90824
Notes

DOMAINS AND MOTIFS   Hide

Domains
Domain Position Length Description Feature Identifier
sHsp 41 to 138 97 Alpha-crystallin domain PF00011

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Protein Card Information

Record Information

Entry Name

sHsp_AGTU3

Accession Number

sHsp_0020

Added on

2012-02-02

Updated On

2014-01-20