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heat shock protein Hsp20 of Acidiphilium cryptum str. JF-5

 Names & Lineage - Classification - Sequence - Domains - Ontologies - Refernces - X-Ref - External Links -Record Info 

NAMES AND LINEAGE

Protein names

Name

heat shock protein Hsp20

Synonymous Names

A5FUZ6_ACICJ, HSP20

Taxon Information

Organism

Acidiphilium cryptum str. JF-5

Organism ID

349163 [NCBI] [UNIPROT]

Lineage

Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; Acidiphilium cryptum JF-5

CLASSIFICATION

Protein Classification

Protein Family

Belongs to sHsp Protein family

SEQUENCE INFORMATION

Sequence
MPSTQVEPRPKAAEPERRPQAAPEFWRPFESLRREVNRLFEDFDGGLLRRALPTSLPFEPFLSRGLGAPA VDIVEQEKAFVITAELPGLTEKDVEIKATDDTLAITGEKRTEQETSEADYQLCERRYGKFERRFSLPAGA DASKIEARFANGVLTITLPKRPEAIRAERKIEIKAG

FASTA Format Composition Secondary Structure

Nucleotide
 ATGCCGAGTACCCAGGTCGAACCCCGGCCGAAAGCGGCGGAACCCGAACGCCGCCCGCAGGCGGCGCCCGAGTTCTGGCGCCCGTTCGA
GTCCCTGCGCCGCGAAGTGAACCGGCTCTTCGAGGATTTCGACGGTGGCCTGTTGCGTCGCGCCCTGCCCACCAGCCTGCCCTTCGAACC
GTTCCTCTCGCGCGGCCTTGGCGCTCCCGCGGTGGATATCGTCGAACAGGAAAAAGCCTTCGTCATCACGGCAGAGTTGCCCGGACTGAC
GGAAAAGGATGTCGAGATCAAGGCCACCGACGACACGCTCGCGATCACCGGCGAAAAACGGACCGAGCAGGAAACCTCAGAAGCGGACTA
CCAACTCTGCGAACGGCGTTACGGCAAGTTCGAGCGTCGCTTCAGCCTACCTGCCGGCGCCGACGCATCGAAGATCGAGGCACGCTTTGC
GAACGGCGTGCTCACGATCACGCTGCCCAAGCGCCCCGAGGCCATCCGCGCCGAGCGCAAGATCGAGATCAAGGCGGGCTGA 

Download Fasta Sequence

Composition
NucleotideCountPercentage
Adenine10921 %
Guanine16331 %
Thyamine7515 %
Cytosine18435 %
A+T18435 %
G+C34766 %

Total Bases :   531 bases

Microsatellites
SequencePosition LengthRepeats
CGCGCG18723

Microsatellite Map

ATGCCGAGTACCCAGGTCGAACCCCGGCCGAAAGCGGCGGAACCCGAACGCCGCCCGCAGGCGGCGCCCGAGTTCTGGCGCCCGTTCGAG
TCCCTGCGCCGCGAAGTGAACCGGCTCTTCGAGGATTTCGACGGTGGCCTGTTGCGTCGCGCCCTGCCCACCAGCCTGCCCTTCGAACCG
TTCCTCTCGCGCGGCCTTGGCGCTCCCGCGGTGGATATCGTCGAACAGGAAAAAGCCTTCGTCATCACGGCAGAGTTGCCCGGACTGACG
GAAAAGGATGTCGAGATCAAGGCCACCGACGACACGCTCGCGATCACCGGCGAAAAACGGACCGAGCAGGAAACCTCAGAAGCGGACTAC
CAACTCTGCGAACGGCGTTACGGCAAGTTCGAGCGTCGCTTCAGCCTACCTGCCGGCGCCGACGCATCGAAGATCGAGGCACGCTTTGCG
AACGGCGTGCTCACGATCACGCTGCCCAAGCGCCCCGAGGCCATCCGCGCCGAGCGCAAGATCGAGATCAAGGCGGGCTGA

Gene Information
Molecule Type genomic DNA
Bases 531 Bases
Molecular Weight163763.28 Da
Coding Sequence complement(CP000697.1:231000..231530)
NCBI ReferenceABQ29428
NotesPFAM: heat shock protein Hsp20

DOMAINS AND MOTIFS   Hide

Domains
Domain Position Length Description Feature Identifier
sHsp 72 to 174 102 Alpha-crystallin domain PF00011

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Protein Card Information

Record Information

Entry Name

sHsp_ACCR1

Accession Number

sHsp_0006

Added on

2012-02-02

Updated On

2014-01-20